Noodle Biomedical Literature Discovery MCP

Measured conclusion: Deep-tested. L2 outcome: tools_ok.

Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.

Add to your agent

Copy this into your MCP client config:

{
  "mcpServers": {
    "Noodle Biomedical Literature Discovery MCP": {
      "url": "https://api.helena.bio/noodle/v1/mcp",
      "transport": "streamable-http"
    }
  }
}

Measured tools (7)

• search_biomedical_literature read-only

  Semantically search Noodle's public PubMed-derived biomedical corpus. Include known PMID, DOI, or PMCID identifiers in the query so they can act as exact anchors. Results are for literature discovery and professional review, not diagnosis or treatment.

  Parameters:

  • query (required) — string — Natural-language literature question or exact PMID, DOI, PMCID, gene, variant, phenotype, HPO, or OMIM query. Include every known publication identifier when comparing or finding related papers.
  • sort — string — Result ordering: relevance-ranked, newest publication first, or oldest publication first.
  • limit — integer — Maximum number of publications to return, from 1 to 25.
  • cursor — Opaque continuation cursor from the preceding response for the same query and sort order; omit for the first page.

  Hints: read-only yes · destructive no · idempotent yes · open-world no

• get_publication_details read-only

  Retrieve one complete public bibliographic record by PMID after search. Results are for literature discovery and professional review, not diagnosis or treatment.

  Parameters:

  • pmid (required) — string — One PubMed identifier to look up in Noodle's current public corpus, as 1 to 12 digits without a PMID prefix.

  Hints: read-only yes · destructive no · idempotent yes · open-world no

• get_work_details read-only

  Retrieve one complete public bibliographic record by Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.

  Parameters:

  • work_id (required) — string — Canonical Noodle Literature Corpus work identifier.

  Hints: read-only yes · destructive no · idempotent yes · open-world no

• get_publication_neighborhood read-only

  Retrieve the bounded citation and semantic neighborhood around one PMID. Results are for literature discovery and professional review, not diagnosis or treatment.

  Parameters:

  • pmid (required) — string — One PubMed identifier, as 1 to 12 digits.
  • from_work_id — Optional prior work ID for a reversible graph path.

  Hints: read-only yes · destructive no · idempotent yes · open-world no

• get_work_neighborhood read-only

  Retrieve the bounded citation and semantic neighborhood around one Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.

  Parameters:

  • work_id (required) — string — Canonical work identifier to place at the graph center.
  • from_work_id — Optional prior work ID for a reversible graph path.

  Hints: read-only yes · destructive no · idempotent yes · open-world no

• get_corpus_summary read-only

  Return public corpus coverage, source, freshness, and count metadata. Results are for literature discovery and professional review, not diagnosis or treatment.

  Hints: read-only yes · destructive no · idempotent yes · open-world no

• support_helena read-only

  Learn about the separate Helena Good MCP. This opt-in information action initiates no payment or outreach and changes no scientific result.

  Hints: read-only yes · destructive no · idempotent yes · open-world no

Publisher website Repository

Measured by MCPYP probing. Untested fields are omitted, never estimated. Listing is always free; MCPYP never proxies calls or stores user tokens.